Using the immutable bit is problematic, especially in conjunction with
store optimisation. For instance, if the garbage collector deletes a
file, it has to clear its immutable bit, but if the file has
additional hard links, we can't set the bit afterwards because we
don't know the remaining paths.
So now that we support having the entire Nix store as a read-only
mount, we may as well drop the immutable bit. Unfortunately, we have
to keep the code to clear the immutable bit for backwards
compatibility.
It turns out that the immutable bit doesn't work all that well. A
better way is to make the entire Nix store a read-only bind mount,
i.e. by doing
$ mount --bind /nix/store /nix/store
$ mount -o remount,ro,bind /nix/store
(This would typically done in an early boot script, before anything
from /nix/store is used.)
Since Nix needs to be able to write to the Nix store, it now detects
if /nix/store is a read-only bind mount and then makes it writable in
a private mount namespace.
The outputs of a derivation can refer to each other (even though they
cannot have cycles), so they have to be deleted in the right order.
http://hydra.nixos.org/build/3026118
If the options gc-keep-outputs and gc-keep-derivations are both
enabled, you can get a cycle in the liveness graph. There was a hack
to handle this, but it didn't work with multiple-output derivations,
causing the garbage collector to fail with errors like ‘error: cannot
delete path `...' because it is in use by `...'’. The garbage
collector now handles strongly connected components in the liveness
graph as a unit and decides whether to delete all or none of the paths
in an SCC.
Note that this will only work if the client has a very recent Nix
version (post 15e1b2c223), otherwise the
--option flag will just be ignored.
Fixes#50.
This handles the chroot and build hook cases, which are easy.
Supporting the non-chroot-build case will require more work (hash
rewriting!).
Issue #21.
"config.h" must be included first, because otherwise the compiler
might not see the right value of _FILE_OFFSET_BITS. We've had this
before; see 705868a8a9. In this case,
GCC would compute a different address for ‘settings.useSubstitutes’ in
misc.cc because of the off_t in ‘settings’.
Reverts 3854fc9b42.
http://hydra.nixos.org/build/3016700
Output names are now appended to resulting GC symlinks, e.g. by
nix-build. For backwards compatibility, if the output is named "out",
nothing is appended. E.g. doing "nix-build -A foo" on a derivation
that produces outputs "out", "bin" and "dev" will produce symlinks
"./result", "./result-bin" and "./result-dev", respectively.
This is required on systemd, which mounts filesystems as "shared"
subtrees. Changes to shared trees in a private mount namespace are
propagated to the outside world, which is bad.
More precisely, in concatLists, if all lists except one are empty,
then just return the non-empty list. This reduces the number of list
element allocations by 32% when evaluating a NixOS system
configuration.
This can serve as a generic efficient list builder. For instance, the
function ‘catAttrs’ in Nixpkgs can be rewritten from
attr: l: fold (s: l: if hasAttr attr s then [(getAttr attr s)] ++ l else l) [] l
to
attr: l: builtins.concatLists (map (s: if hasAttr attr s then [(getAttr attr s)] else []) l)
Statistics before:
time elapsed: 1.08683
size of a value: 24
environments allocated: 1384376 (35809568 bytes)
list elements: 6946783 (55574264 bytes)
list concatenations: 37434
values allocated: 1760440 (42250560 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18273
number of thunks: 1297673
number of thunks avoided: 1380759
number of attr lookups: 430802
number of primop calls: 628912
number of function calls: 1333544
Statistics after (including new catAttrs):
time elapsed: 0.959854
size of a value: 24
environments allocated: 1010198 (26829296 bytes)
list elements: 1984878 (15879024 bytes)
list concatenations: 30488
values allocated: 1589760 (38154240 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18274
number of thunks: 1040925
number of thunks avoided: 1038428
number of attr lookups: 438419
number of primop calls: 474844
number of function calls: 959366
The one in Nixpkgs is O(n^2), this one is O(n). Big reduction in the
number of list allocations.
Statistics before (on a NixOS system config):
time elapsed: 1.17982
size of a value: 24
environments allocated: 1543334 (39624560 bytes)
list elements: 9612638 (76901104 bytes)
list concatenations: 37434
values allocated: 1854933 (44518392 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18272
number of thunks: 1392467
number of thunks avoided: 1507311
number of attr lookups: 430801
number of primop calls: 691600
number of function calls: 1492502
Statistics after:
time elapsed: 1.08683
size of a value: 24
environments allocated: 1384376 (35809568 bytes)
list elements: 6946783 (55574264 bytes)
list concatenations: 37434
values allocated: 1760440 (42250560 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18273
number of thunks: 1297673
number of thunks avoided: 1380759
number of attr lookups: 430802
number of primop calls: 628912
number of function calls: 1333544
Evaluation of a NixOS configuration spends quite a lot of time in the
"filter" function in Nixpkgs. As implemented in Nixpkgs, this is a
O(n^2) operation, so it's a good candidate for providing a more
efficient (i.e. primop) implementation. Using it gives a ~10% speed
increase and a significant reduction in the number of evaluations.
Statistics before (on a NixOS system config):
time elapsed: 1.3258
size of a value: 24
environments allocated: 1980939 (50127080 bytes)
list elements: 14679308 (117434464 bytes)
list concatenations: 50828
values allocated: 2098938 (50374512 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18271
number of thunks: 1645752
number of thunks avoided: 1921196
number of attr lookups: 430798
number of primop calls: 838807
number of function calls: 1930107
Statistics after:
time elapsed: 1.17982
size of a value: 24
environments allocated: 1543334 (39624560 bytes)
list elements: 9612638 (76901104 bytes)
list concatenations: 37434
values allocated: 1854933 (44518392 bytes)
attribute sets allocated: 392040
right-biased unions: 186334
values copied in right-biased unions: 591137
symbols in symbol table: 18272
number of thunks: 1392467
number of thunks avoided: 1507311
number of attr lookups: 430801
number of primop calls: 691600
number of function calls: 1492502
Setting the environment variable NIX_COUNT_CALLS to 1 enables some
basic profiling in the evaluator. It will count calls to functions
and primops as well as evaluations of attributes.
For example, to see where evaluation of a NixOS configuration spends
its time:
$ NIX_SHOW_STATS=1 NIX_COUNT_CALLS=1 ./src/nix-instantiate/nix-instantiate '<nixos>' -A system --readonly-mode
...
calls to 39 primops:
239532 head
233962 tail
191252 hasAttr
...
calls to 1595 functions:
224157 `/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/pkgs/lib/lists.nix:17:19'
221767 `/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/pkgs/lib/lists.nix:17:14'
221767 `/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/pkgs/lib/lists.nix:17:10'
...
evaluations of 7088 attributes:
167377 undefined position
132459 `/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/pkgs/lib/attrsets.nix:119:41'
47322 `/nix/var/nix/profiles/per-user/root/channels/nixos/nixpkgs/pkgs/lib/attrsets.nix:13:21'
...
This is a problem because one process may set the immutable bit before
the second process has created its link.
Addressed random Hydra failures such as:
error: cannot rename `/nix/store/.tmp-link-17397-1804289383' to
`/nix/store/rsvzm574rlfip3830ac7kmaa028bzl6h-nixos-0.1pre-git/upstart-interface-version':
Operation not permitted
Channels are implemented using a profile now, and profiles contain a
manifest.nix file. This should be ignored to prevent bogus packages
from showing up in nix-env.
Since SubstitutionGoal::finished() in build.cc computes the hash
anyway, we can prevent the inefficiency of computing the hash twice by
letting the substituter tell Nix about the expected hash, which can
then verify it.
The generated attrset has drvPath and outPath with the right string context, type 'derivation', outputName with
the right name, all with a list of outputs, and an attribute for each output.
I see three uses for this (though certainly there may be more):
* Using derivations generated by something besides nix-instantiate (e.g. guix)
* Allowing packages provided by channels to be used in nix expressions. If a channel installed a valid deriver
for each package it provides into the store, then those could be imported and used as dependencies or installed
in environment.systemPackages, for example.
* Enable hydra to be consistent in how it treats inputs that are outputs of another build. Right now, if an
input is passed as an argument to the job, it is passed as a derivation, but if it is accessed via NIX_PATH
(i.e. through the <> syntax), then it is a path that can be imported. This is problematic because the build
being depended upon may have been built with non-obvious arguments passed to its jobset file. With this
feature, hydra can just set the name of that input to the path to its drv file in NIX_PATH
Incremental optimisation requires creating links in /nix/store/.links
to all files in the store. However, this means that if we delete a
store path, no files are actually deleted because links in
/nix/store/.links still exists. So we need to check /nix/store/.links
for files with a link count of 1 and delete them.
optimiseStore() now creates persistent, content-addressed hard links
in /nix/store/.links. For instance, if it encounters a file P with
hash H, it will create a hard link
P' = /nix/store/.link/<H>
to P if P' doesn't already exist; if P' exist, then P is replaced by a
hard link to P'. This is better than the previous in-memory map,
because it had the tendency to unnecessarily replace hard links with a
hard link to whatever happened to be the first file with a given hash
it encountered. It also allows on-the-fly, incremental optimisation.
To implement binary caches efficiently, Hydra needs to be able to map
the hash part of a store path (e.g. "gbg...zr7") to the full store
path (e.g. "/nix/store/gbg...kzr7-subversion-1.7.5"). (The binary
cache mechanism uses hash parts as a key for looking up store paths to
ensure privacy.) However, doing a search in the Nix store for
/nix/store/<hash>* is expensive since it requires reading the entire
directory. queryPathFromHashPart() prevents this by doing a cheap
database lookup.
queryValidPaths() combines multiple calls to isValidPath() in one.
This matters when using the Nix daemon because it reduces latency.
For instance, on "nix-env -qas \*" it reduces execution time from 5.7s
to 4.7s (which is indistinguishable from the non-daemon case).
Instead make a single call to querySubstitutablePathInfo() per
derivation output. This is faster and prevents having to implement
the "have" function in the binary cache substituter.
Getting substitute information using the binary cache substituter has
non-trivial latency overhead. A package or NixOS system configuration
can have hundreds of dependencies, and in the worst case (when the
local info cache is empty) we have to do a separate HTTP request for
each of these. If the ping time to the server is t, getting N info
files will take tN seconds; e.g., with a ping time of 0.1s to
nixos.org, sequentially downloading 1000 info files (a typical NixOS
config) will take at least 100 seconds.
To fix this problem, the binary cache substituter can now perform
requests in parallel. This required changing the substituter
interface to support a function querySubstitutablePathInfos() that
queries multiple paths at the same time, and rewriting queryMissing()
to take advantage of parallelism. (Due to local caching,
parallelising queryMissing() is sufficient for most use cases, since
it's almost always called before building a derivation and thus fills
the local info cache.)
For example, parallelism speeds up querying all 1056 paths in a
particular NixOS system configuration from 116s to 2.6s. It works so
well because the eccentricity of the top-level derivation in the
dependency graph is only 9. So we only need 10 round-trips (when
using an unlimited number of parallel connections) to get everything.
Currently we do a maximum of 150 parallel connections to the server.
Thus it's important that the binary cache server (e.g. nixos.org) has
a high connection limit. Alternatively we could use HTTP pipelining,
but WWW::Curl doesn't support it and libcurl has a hard-coded limit of
5 requests per pipeline.
In a private PID namespace, processes have PIDs that are separate from
the rest of the system. The initial child gets PID 1. Processes in
the chroot cannot see processes outside of the chroot. This improves
isolation between builds. However, processes on the outside can see
processes in the chroot and send signals to them (if they have
appropriate rights).
Since the builder gets PID 1, it serves as the reaper for zombies in
the chroot. This might turn out to be a problem. In that case we'll
need to have a small PID 1 process that sits in a loop calling wait().
In chroot builds, set the host name to "localhost" and the domain name
to "(none)" (the latter being the kernel's default). This improves
determinism a bit further.
P.S. I have to idea what UTS stands for.
This improves isolation a bit further, and it's just one extra flag in
the unshare() call.
P.S. It would be very cool to use CLONE_NEWPID (to put the builder in
a private PID namespace) as well, but that's slightly more risky since
having a builder start as PID 1 may cause problems.
On Linux it's possible to run a process in its own network namespace,
meaning that it gets its own set of network interfaces, disjunct from
the rest of the system. We use this to completely remove network
access to chroot builds, except that they get a private loopback
interface. This means that:
- Builders cannot connect to the outside network or to other processes
on the same machine, except processes within the same build.
- Vice versa, other processes cannot connect to processes in a chroot
build, and open ports/connections do not show up in "netstat".
- If two concurrent builders try to listen on the same port (e.g. as
part of a test), they no longer conflict with each other.
This was inspired by the "PrivateNetwork" flag in systemd.
Systemd can start the Nix daemon on demand when the Nix daemon socket
is first accessed. This is signalled through the LISTEN_FDS
environment variable, so all we need to do is check for that and then
use file descriptor 3 as the listen socket instead of creating one
ourselves.
We can't open a SQLite database if the disk is full. Since this
prevents the garbage collector from running when it's most needed, we
reserve some dummy space that we can free just before doing a garbage
collection. This actually revives some old code from the Berkeley DB
days.
Fixes#27.
There is a race condition when doing parallel builds with chroots and
the immutable bit enabled. One process may call makeImmutable()
before the other has called link(), in which case link() will fail
with EPERM. We could retry or wrap the operation in a lock, but since
this condition is rare and I'm lazy, we just use the existing copy
fallback.
Fixes#9.
This should fix rare Hydra errors of the form:
error: symlinking `/nix/var/nix/gcroots/per-user/hydra/hydra-roots/7sfhs5fdmjxm8sqgcpd0pgcsmz1kq0l0-nixos-iso-0.1pre33785-33795' to `/nix/store/7sfhs5fdmjxm8sqgcpd0pgcsmz1kq0l0-nixos-iso-0.1pre33785-33795': File exists
Setting the UNAME26 personality causes "uname" to return "2.6.x",
regardless of the kernel version. This improves determinism in
a few misbehaved packages.
Make the garbage collector more concurrent by deleting valid paths
outside the region where we're holding the global GC lock. This
should greatly reduce the time during which new builds are blocked,
since the deletion accounts for the vast majority of the time spent in
the GC.
To ensure that this is safe, the valid paths are invalidated and
renamed to some arbitrary path while we're holding the lock. This
ensures that we when we finally delete the path, it's not a (newly)
valid or locked path.
Nix now requires SQLite and bzip2 to be pre-installed. SQLite is
detected using pkg-config. We required DBD::SQLite anyway, so
depending on SQLite is not a big problem.
The --with-bzip2, --with-openssl and --with-sqlite flags are gone.
By moving the destructor object to libstore.so, it's also run when
download-using-manifests and nix-prefetch-url exit. This prevents
them from cluttering /nix/var/nix/temproots with stale files.
Not all SQLite builds have the function sqlite3_table_column_metadata.
We were only using it in a schema upgrade check for compatibility with
databases that were probably never seen in the wild. So remove it.
The variable ‘useChroot’ was not initialised properly. This caused
random failures if using the build hook. Seen on Mac OS X 10.7 with Clang.
Thanks to KolibriFX for finding this :-)
Chroots are initialised by hard-linking inputs from the Nix store to
the chroot. This doesn't work if the input has its immutable bit set,
because it's forbidden to create hard links to immutable files. So
temporarily clear the immutable bit when creating and destroying the
chroot.
Note that making regular files in the Nix store immutable isn't very
reliable, since the bit can easily become cleared: for instance, if we
run the garbage collector after running ‘nix-store --optimise’. So
maybe we should only make directories immutable.
I was bitten one time too many by Python modifying the Nix store by
creating *.pyc files when run as root. On Linux, we can prevent this
by setting the immutable bit on files and directories (as in ‘chattr
+i’). This isn't supported by all filesystems, so it's not an error
if setting the bit fails. The immutable bit is cleared by the garbage
collector before deleting a path. The only tricky aspect is in
optimiseStore(), since it's forbidden to create hard links to an
immutable file. Thus optimiseStore() temporarily clears the immutable
bit before creating the link.
environment of the given derivation in a format that can be sourced
by the shell, e.g.
$ eval "$(nix-store --print-env $(nix-instantiate /etc/nixos/nixpkgs -A pkg))"
$ NIX_BUILD_TOP=/tmp
$ source $stdenv/setup
This is especially useful to reproduce the environment used to build
a package outside of its builder for development purposes.
TODO: add a nix-build option to do the above and fetch the
dependencies of the derivation as well.
other simplifications.
* Use <nix/...> to locate the corepkgs. This allows them to be
overriden through $NIX_PATH.
* Use bash's pipefail option in the NAR builder so that we don't need
to create a temporary file.
unreachable paths. This matters when using --max-freed etc.:
unreachable paths could become reachable again, so it's nicer to
keep them if there is "real" garbage to be deleted. Also, don't use
readDirectory() but read the Nix store and delete invalid paths in
parallel. This reduces GC latency on very large Nix stores.
* Buffer the HashSink. This speeds up hashing a bit because it
prevents lots of calls to the hash update functions (e.g. nix-hash
went from 9.3s to 8.7s of user time on the closure of my
/var/run/current-system).
significantly cuts down the number of syscalls (e.g., for "nix-store
-qR /var/run/current-system" via the daemon, it reduced the number
of syscalls in the client from 29134 to 4766 and in the daemon from
44266 to 20666).
daemon (which is an error), print a nicer error message than
"Connection reset by peer" or "broken pipe".
* In the daemon, log errors that occur during request parameter
processing.
‘nix-store --export’.
* Add a Perl module that provides the functionality of
‘nix-copy-closure --to’. This is used by build-remote.pl so it no
longer needs to start a separate nix-copy-closure process. Also, it
uses the Perl API to do the export, so it doesn't need to start a
separate nix-store process either. As a result, nix-copy-closure
and build-remote.pl should no longer fail on very large closures due
to an "Argument list too long" error. (Note that having very many
dependencies in a single derivation can still fail because the
environment can become too large. Can't be helped though.)
libstore so that the Perl bindings can use it as well. It's vital
that the Perl bindings use the configuration file, because otherwise
nix-copy-closure will fail with a ‘database locked’ message if the
value of ‘use-sqlite-wal’ is changed from the default.
For each output, this adds a corresponding attribute to the derivation that is
the same as the derivation except for outPath, which is set to the path specific
to that output. Additionally, an "all" attribute is added that is a list of all
of the output derivations. This has to be done outside of derivationStrict as
each output is itself a derivation that contains itself (and all other outputs)
as an attribute. The derivation itself is equivalent to the first output in the
outputs list (or "out" if that list isn't set).
the contents of any of the given store paths have been modified.
E.g.
$ nix-store --verify-path $(nix-store -qR /var/run/current-system)
path `/nix/store/m2smyiwbxidlprfxfz4rjlvz2c3mg58y-etc' was modified! expected hash `fc87e271c5fdf179b47939b08ad13440493805584b35e3014109d04d8436e7b8', got `20f1a47281b3c0cbe299ce47ad5ca7340b20ab34246426915fce0ee9116483aa'
All paths are checked; the exit code is 1 if any path has been
modified, 0 otherwise.
This should also fix:
nix-instantiate: ./../boost/shared_ptr.hpp:254: T* boost::shared_ptr<T>::operator->() const [with T = nix::StoreAPI]: Assertion `px != 0' failed.
which was caused by hashDerivationModulo() calling the ‘store’
object (during store upgrades) before openStore() assigned it.
prevents files from being evaluated and stored as values multiple
times. For instance, evaluation of the ‘system’ attribute in NixOS
causes ‘nixpkgs/pkgs/lib/lists.nix’ to be evaluated 2019 times.
Caching gives a modest speedup and a decent memory footprint
reduction (e.g., from 1.44s to 1.28s, and from 81 MiB to 59 MiB with
GC_INITIAL_HEAP_SIZE=100000 on my system).
directory
/home/eelco/src/stdenv-updates
that you want to use as the directory for import such as
with (import <nixpkgs> { });
then you can say
$ nix-build -I nixpkgs=/home/eelco/src/stdenv-updates
brackets, e.g.
import <nixpkgs/pkgs/lib>
are resolved by looking them up relative to the elements listed in
the search path. This allows us to get rid of hacks like
import "${builtins.getEnv "NIXPKGS_ALL"}/pkgs/lib"
The search path can be specified through the ‘-I’ command-line flag
and through the colon-separated ‘NIX_PATH’ environment variable,
e.g.,
$ nix-build -I /etc/nixos ...
If a file is not found in the search path, an error message is
lazily thrown.
derivations added to the store by clients have "correct" output
paths (meaning that the output paths are computed by hashing the
derivation according to a certain algorithm). This means that a
malicious user could craft a special .drv file to build *any*
desired path in the store with any desired contents (so long as the
path doesn't already exist). Then the attacker just needs to wait
for a victim to come along and install the compromised path.
For instance, if Alice (the attacker) knows that the latest Firefox
derivation in Nixpkgs produces the path
/nix/store/1a5nyfd4ajxbyy97r1fslhgrv70gj8a7-firefox-5.0.1
then (provided this path doesn't already exist) she can craft a .drv
file that creates that path (i.e., has it as one of its outputs),
add it to the store using "nix-store --add", and build it with
"nix-store -r". So the fake .drv could write a Trojan to the
Firefox path. Then, if user Bob (the victim) comes along and does
$ nix-env -i firefox
$ firefox
he executes the Trojan injected by Alice.
The fix is to have the Nix daemon verify that derivation outputs are
correct (in addValidPath()). This required some refactoring to move
the hash computation code to libstore.
by setting the ‘outputs’ attribute. For example:
stdenv.mkDerivation {
name = "aterm-2.5";
src = ...;
outputs = [ "out" "tools" "dev" ];
configureFlags = "--bindir=$(tools)/bin --includedir=$(dev)/include";
}
This derivation creates three outputs, named like this:
/nix/store/gcnqgllbh01p3d448q8q6pzn2nc2gpyl-aterm-2.5
/nix/store/gjf1sgirwfnrlr0bdxyrwzpw2r304j02-aterm-2.5-tools
/nix/store/hp6108bqfgxvza25nnxfs7kj88xi2vdx-aterm-2.5-dev
That is, the symbolic name of the output is suffixed to the store
path (except for the ‘out’ output). Each path is passed to the
builder through the corresponding environment variable, e.g.,
${tools}.
The main reason for multiple outputs is to allow parts of a package
to be distributed and garbage-collected separately. For instance,
most packages depend on Glibc for its libraries, but don't need its
header files. If these are separated into different store paths,
then a package that depends on the Glibc libraries only causes the
libraries and not the headers to be downloaded.
The main problem with multiple outputs is that if one output exists
while the others have been garbage-collected (or never downloaded in
the first place), and we want to rebuild the other outputs, then
this isn't possible because we can't clobber a valid output (it
might be in active use). This currently gives an error message
like:
error: derivation `/nix/store/1s9zw4c8qydpjyrayxamx2z7zzp5pcgh-aterm-2.5.drv' is blocked by its output paths
There are two solutions: 1) Do the build in a chroot. Then we don't
need to overwrite the existing path. 2) Use hash rewriting (see the
ASE-2005 paper). Scary but it should work.
This is not finished yet. There is not yet an easy way to refer to
non-default outputs in Nix expressions. Also, mutually recursive
outputs aren't detected yet and cause the garbage collector to
crash.
write ‘attrs ? a.b’ to test whether ‘attrs’ has an attribute ‘a’
containing an attribute ‘b’. This is more convenient than ‘attrs ?
a && attrs.a ? b’.
Slight change in the semantics: it's no longer an error if the
left-hand side of ‘?’ is not an attribute set. In that case it just
returns false. So, ‘null ? foo’ no longer throws an error.
checked too soon whether substitutes are available. That is, it did
so for every available package, rather than those matching installed
packages. This was very slow and subject to assertion failures. So
do the check much later. Idem for `nix-env -qab' and `nix-env -ib'.
little RAM. Even if the memory isn't actually used, it can cause
problems with the overcommit heuristics in the kernel. So use a VM
space of 25% of RAM, up to 384 MB.
while checking the contents, since this operation can take a very
long time to finish. Also, fill in missing narSize fields in the DB
while doing this.
even with a very long busy timeout, because SQLITE_BUSY is also
returned to resolve deadlocks. This should get rid of random
"database is locked" errors. This is kind of hard to test though.
* Fix a horrible bug in deleteFromStore(): deletePathWrapped() should
be called after committing the transaction, not before, because the
commit might not succeed.
